Biology · Computation · Evidence
Understanding biology.
Building useful tools.
I analyze omics data and develop scientific software, including AI tools for biomedical evidence retrieval. Through experimental collaboration and researcher training, I translate computational results into clear biological findings and practical next steps.
Areas of expertise
Selected workBiomedical AI
Omics analysis
& interpretation
I integrate transcriptomic and epigenomic data to investigate biological questions with experimental collaborators. Current work extends to single-cell and spatial analysis.
- Vascular repairSingle-cell & spatial case study
- Neuroimmune transcriptomicsBulk and single-nucleus RNA-seq · protein-network analysis · Analysis reports
Scientific software
& workflows
I design analytical workflows and build the tools that make them reusable, from transcriptomic annotation to sequencing-data submission and reproducible software distribution.
- RCASOriginal workflow & foundational code
- ena-upload-cliOriginal design & foundational code
- RNA workbenchGalaxy tools & workflows
- BcheckRNase P RNA gene prediction
Training
& collaboration
I teach bulk and single-cell RNA-seq analysis, supervise computational research projects and work with experimental scientists to turn analytical results into biological insight.
- Community-driven trainingCell Systems publication
- AxoWiseProject conception & student supervision